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Old 10-17-2016, 03:22 PM   #1
horvathdp
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Location: Fargo

Join Date: Dec 2011
Posts: 66
Default Removing duplicate fastq entries from concatenated files

I have concatenated two fastq files and I m pretty certain I have quite a few duplicates. Is there a script, program (something in BBMAP?) or common way to remove duplicates based on the sequence identifier (as opposed to a kmer-or sequence based method since I want to retain all unique fragments at this point)? Any assistance would be most appreciated.
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