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Old 02-01-2017, 09:22 AM   #1
Location: US

Join Date: Apr 2010
Posts: 63
Default Blastn x megablast - homologous genes

I have a list of nucleotide sequences (genes) and I would like to Blast against a list of nucleotide sequences from other species to check potential homologous sequences (orthologs and paralogs).

Which blast is best for it? Blastn or Megablast?

My smallest sequence has 12 nucleotides, and the largest has 16,000.


Last edited by clarissaboschi; 02-01-2017 at 01:31 PM.
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