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Old 11-24-2010, 02:08 PM   #2
hsmart
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Location: Maryland

Join Date: Dec 2009
Posts: 15
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Dear All,

We generated ChIP-seq and RNA-seq data few cell-lines. I want to visualize these data in UCSC Genome Browser. How can I make appropriate files similar to ENCODE density plots for ChIP-seq data?
http://genome.ucsc.edu/cgi-bin/hgTra...gsid=173185756

Should I include all the reads or only reads after peak finding software?

Thanks for your help,

Best wishes,

Rakesh
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