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Old 10-14-2011, 04:10 AM   #2
Location: London

Join Date: Jun 2010
Posts: 51

Also UCSC GB has highlighted changes in the BAM Files. Is it possible to have these in a track as well. It would be good to have Seattle Seq annotations, UCSC annotations and ANNOVAR annotations as different tracks to compare and see what is in agreement with all? If there are other SNP annotations that people want to recommend that would be good to have them as tracks as well.

And if we could also figure out how to generate a track of the gaps or once we have the histogram areas of low coverage and gaps that would be helpful.

I have the BAMTools manual and MacOSX but not sure how to get started. Maybe there is a simple pipe for me to get used to using the program. Have limited unix skills but happy to learn.

Once again thanks.
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