Hi all,
I want to analyze data from a RIP-seq experiment (an IP of a protein that binds to mRNAs).
Can I use MACS for this (not forgetting to change the bandwidth, slocal and llocal accordingly)? Are there any problems or biases for using it for this assay (RNA instead of DNA, longer peaks, etc.)?
Is there another analysis tool for RIP-seq ?
Thanks,
Rachelly.
I want to analyze data from a RIP-seq experiment (an IP of a protein that binds to mRNAs).
Can I use MACS for this (not forgetting to change the bandwidth, slocal and llocal accordingly)? Are there any problems or biases for using it for this assay (RNA instead of DNA, longer peaks, etc.)?
Is there another analysis tool for RIP-seq ?
Thanks,
Rachelly.
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