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Old 08-05-2013, 10:09 AM   #2
rhinoceros
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You could look around NCBI's ftp. Maybe your species is already in the SNP DB? If not, you might have to do all-vs-all blasts and clustering (maybe OrthoMCL) to find out the shared genes. What you want might be possible with eutils too. Oh and there's this pipeline called HAL that might do what you want..

Last edited by rhinoceros; 08-05-2013 at 10:17 AM.
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