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Old 11-18-2013, 02:27 PM   #13
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Location: East Coast USA

Join Date: Feb 2008
Posts: 6,978

Originally Posted by sindrle View Post
So, how to do that? :P
Have a look at the Table Browser tutorial: You will finally want to select data in BED format for output.

You can get the UCSC, CCDS, RefSeq, Ensembl, VEGA, MGC genes by choosing the right tables to query against.

That can be followed by BEDTools intersectBed (or an appropriate other option):
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