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Old 11-18-2013, 05:23 PM   #14
Senior Member
Location: Norway

Join Date: Aug 2013
Posts: 266

Ok, I downloaded all you said and ran this:

bedtools intersect -wo -bed -a file1 -b file2 > out1

But at the end the output file is 20gb...

Tried this instead:

unionBedGraphs - file1 -file2 etc

But gave error:

Assertion failed: (!queue.empty()), function ConsumeNextCoordinate, file unionBedGraphs.cpp, line 99.
/usr/bin/unionBedGraphs: line 2: 21166 Abort trap: 6 ${0%/*}/bedtools unionbedg "$@"
sindrle is offline   Reply With Quote