View Single Post
Old 04-25-2011, 03:03 AM   #14
JackieBadger
Senior Member
 
Location: Halifax, Nova Scotia

Join Date: Mar 2009
Posts: 381
Default

Quote:
Originally Posted by Chuckytah View Post
Hello,

I have found this website: http://rdp.cme.msu.edu/classifier/classifier.jsp but it's for bacteria and archeobacteria...

don't know about one for all the kingdoms?

I have a contigs.fasta and i want to know how many sequences i have from wich taxonomic groups...
The Galaxy web portal has a MegaBlast tool, which will also build trees of your sequences highlighted by taxa. Watch the video tutorial on "Processing and analysis of 454 data in metagenomic studies"

http://main.g2.bx.psu.edu/
JackieBadger is offline   Reply With Quote