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Old 04-24-2012, 12:30 PM   #5
greener
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Location: Seattle, WA

Join Date: Sep 2010
Posts: 17
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here is one

[greener@kojak bowtie]$ head -n 10 /vol01/genome/mouse/ucsc/annotation/mm9_ucsc_refGene.txt.gtf2.2
chr1 ucsc exon 134212701 134213049 . + 0 gene_id "NM_028778:134212701"; transcript_id "NM_028778:134212701";
chr1 ucsc exon 134221529 134221650 . + 0 gene_id "NM_028778:134212701"; transcript_id "NM_028778:134212701";
chr1 ucsc exon 134224273 134224425 . + 1 gene_id "NM_028778:134212701"; transcript_id "NM_028778:134212701";
chr1 ucsc exon 134224707 134224773 . + 0 gene_id "NM_028778:134212701"; transcript_id "NM_028778:134212701";
chr1 ucsc exon 134226534 134226654 . + 0 gene_id "NM_028778:134212701"; transcript_id "NM_028778:134212701";
chr1 ucsc exon 134227135 134227268 . + 0 gene_id "NM_028778:134212701"; transcript_id "NM_028778:134212701";
chr1 ucsc exon 134227897 134230065 . + 1 gene_id "NM_028778:134212701"; transcript_id "NM_028778:134212701";
chr1 ucsc exon 134212701 134213049 . + 0 gene_id "NM_001195025:134212701"; transcript_id "NM_001195025:134212701";
chr1 ucsc exon 134221529 134221650 . + 0 gene_id "NM_001195025:134212701"; transcript_id "NM_001195025:134212701";
chr1 ucsc exon 134222782 134222806 . + 1 gene_id "NM_001195025:134212701"; transcript_id "NM_001195025:134212701";
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