View Single Post
Old 02-12-2009, 08:17 AM   #1
Layla
Member
 
Location: London

Join Date: Sep 2008
Posts: 58
Default All chromosomes and maq

Hi all,

Has anybody used hg18.2bit from the ucsc genome browser as the reference genome for MAQ? As I cannot give more than one ref.fa file to MAQ, is this the right way to be aligning solexa reads to the entire human genome?

Thanks
Layla
Layla is offline   Reply With Quote