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Old 09-03-2012, 11:40 AM   #3
el_Davido
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Location: Germany

Join Date: Sep 2012
Posts: 5
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Thanks for your answer, SES.

The thing is, it's not just a matter of re-formatting. When I sort the file of interest in terms of chromosome and read-position, it looks like this (Sorry for not mentioning this before):

chr1 3001356 3001381 U0 0 -
chr1 3001356 3001381 U0 0 -
chr1 3001356 3001381 U0 0 -
chr1 3001356 3001381 U0 0 -
chr1 3007329 3007354 U0 0 +
chr1 3013242 3013267 U0 0 -
chr1 3016493 3016518 U0 0 -
chr1 3016493 3016518 U0 0 -
chr1 3016493 3016518 U0 0 -
chr1 3053811 3053836 U0 0 +
chr1 3053930 3053955 U0 0 -
chr1 3053930 3053955 U0 0 -
chr1 3053930 3053955 U0 0 -


So the task is: Realize, that chr1 3001356 to 3001381 is measured 4 times and give an according score etc.

Any advice how to continue?

PS: I got the original file from http://www.ncbi.nlm.nih.gov/geo/quer...i?acc=GSE27158
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