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Old 09-03-2012, 01:04 PM   #7
SES
Senior Member
 
Location: Vancouver, BC

Join Date: Mar 2010
Posts: 275
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Quote:
Originally Posted by el_Davido View Post
Is it a valid approach to count the number of individual reads?

Code:
chr1 3001356 3001381 U0 0 -
chr1 3001356 3001381 U0 0 -
chr1 3001356 3001381 U0 0 -
chr1 3001356 3001381 U0 0 -
chr1 3007329 3007354 U0 0 +
chr1 3013242 3013267 U0 0 -
chr1 3016493 3016518 U0 0 -
chr1 3016493 3016518 U0 0 -
chr1 3016493 3016518 U0 0 -
Would become (in my view)

Code:
chr1 3001356 3001381 4
chr1 3007329 3007354 1
chr1 3013242 3013267 1
chr1 3016493 3016518 3
Thanks for your support so far, SES!
You are welcome, but unfortunately, I am not sure this is the right thing to do with this data. You might want to follow up with the suggestion from @Chipper above. Good luck.
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