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Old 07-01-2011, 05:23 PM   #2
quinlana
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Location: Charlottesville

Join Date: Sep 2008
Posts: 119
Default

If you type "coverageBed -h", the last few lines describe the output format.

Code:
Default Output:  
	 After each entry in B, reports: 
	   1) The number of features in A that overlapped the B interval.
	   2) The number of bases in B that had non-zero coverage.
	   3) The length of the entry in B.
	   4) The fraction of bases in B that had non-zero coverage.
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