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Old 01-18-2010, 03:20 AM   #3
dnusol
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Location: Spain

Join Date: Jul 2009
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Actually, if I am not wrong, Maq`s pileup output has a column with the number of reads aligning at a given position, so you can get those with a 0 coverage out

HTH,

Dave

Last edited by dnusol; 01-18-2010 at 03:23 AM.
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