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Old 06-25-2010, 06:00 PM   #4
nilshomer
Nils Homer
 
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Location: Boston, MA, USA

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Quote:
Originally Posted by jlfmssm View Post
Thanks, I tried, but I got this error:

[aimin@node01 all_sam_data]$ samtools view -X 1382_1.sam/1382_1.sam
[bam_header_read] EOF marker is absent.
[main_samview] fail to read the header.
Use the "-S" flag to specify that you are inputting a SAM file (not a BAM file). Please read the documentation, including the output when no options/input is specified.
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