Hi,
I am trying CISA program to integrate a set of contigs obtained with different assemblers and it seems pretty easy to run. Just 2 python scritps, one to merge the contigs and the second to perform the integration but so far I am getting this error:
python CISA.py cisa.config
CISA1....
Contigs: 887
Whole_Genome: 0
Ref0.fa and Query0.fa start to run NUCmer!
Done!
Traceback (most recent call last):
File "CISA.py", line 34, in <module>
my_work.Start(g_l,infile,nucmer,CISA_S,current_p)
File "/home/Documents/Software/CISA1.2/src/CISA1/Controllor_R1.py", line 43, in Start
mywork.Start(genome_l,infile,nucmer)
File "/home/Documents/Software/CISA1.2/src/CISA1/Auto_Run.py", line 172, in Start
self.make_new_coords()
File "/home/Documents/Software/CISA1.2/src/CISA1/Auto_Run.py", line 87, in make_new_coords
f=open('CISA1/result'+str(count)+'.coords')
IOError: [Errno 2] No such file or directory: 'CISA1/result0.coords'
Anyone knows what's wrong? There isn't any prework specifying anything about that result0.coords file.
Thanks
I am trying CISA program to integrate a set of contigs obtained with different assemblers and it seems pretty easy to run. Just 2 python scritps, one to merge the contigs and the second to perform the integration but so far I am getting this error:
python CISA.py cisa.config
CISA1....
Contigs: 887
Whole_Genome: 0
Ref0.fa and Query0.fa start to run NUCmer!
Done!
Traceback (most recent call last):
File "CISA.py", line 34, in <module>
my_work.Start(g_l,infile,nucmer,CISA_S,current_p)
File "/home/Documents/Software/CISA1.2/src/CISA1/Controllor_R1.py", line 43, in Start
mywork.Start(genome_l,infile,nucmer)
File "/home/Documents/Software/CISA1.2/src/CISA1/Auto_Run.py", line 172, in Start
self.make_new_coords()
File "/home/Documents/Software/CISA1.2/src/CISA1/Auto_Run.py", line 87, in make_new_coords
f=open('CISA1/result'+str(count)+'.coords')
IOError: [Errno 2] No such file or directory: 'CISA1/result0.coords'
Anyone knows what's wrong? There isn't any prework specifying anything about that result0.coords file.
Thanks
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