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Old 04-22-2015, 01:16 AM   #1
Location: Uganda

Join Date: Jan 2015
Posts: 71
Default igv visualization

Dear all,
I have used bowtie2 to align paired end illumina reads from cowpea and generated bam files. my next task is to visualise the alignments using igv. how do i proceed without a cowpea enome. My interest is to find out the proportion (number or percentages) of reads a matching each of the virus hits.
I am working on a server.
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