SEQanswers - View Single Post - Help with bowtie2 for a beginner (windows)

Kennels · 10-23-2013, 07:01 PM

Try also putting '-q' option to specify it is fastq input.
If that still fails, what is the output from

Code:

head NA11881.fastq

some check questions:

Can you post any errors or warning you are getting?
Do you have all the index files in the same directory?
Do you have 8 cpus on your computer?

10-23-2013, 07:01 PM	#4
Kennels Senior Member Location: Sydney Join Date: Feb 2011 Posts: 149	Try also putting '-q' option to specify it is fastq input. If that still fails, what is the output from Code: head NA11881.fastq some check questions: Can you post any errors or warning you are getting? Do you have all the index files in the same directory? Do you have 8 cpus on your computer?