SEQanswers - View Single Post - Uploading BAM Track to UCSC Genome Browser

raela · 07-09-2010, 12:08 PM

I would double check the file is there and okay. Have you gone to the location in your browser window and seen if it asks you to download the file? If so, you should be good. I usually see that when I tell UCSC to use a non-BAM file (like pointing it to a bedGraph). track type=bam name=name bigDataUrl=http://blah/foo.bam has always been sufficient for me.

07-09-2010, 12:08 PM	#2
raela Member Location: Ithaca, NY Join Date: Apr 2010 Posts: 39	I would double check the file is there and okay. Have you gone to the location in your browser window and seen if it asks you to download the file? If so, you should be good. I usually see that when I tell UCSC to use a non-BAM file (like pointing it to a bedGraph). track type=bam name=name bigDataUrl=http://blah/foo.bam has always been sufficient for me.