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Old 08-18-2010, 08:50 AM   #1
jjw14
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Location: Missouri

Join Date: Apr 2010
Posts: 39
Default MeDIP-seq versus ChIP-seq analyses?

I've shortened my previous post in hopes of getting a response:

- I am mapping MeDIP sequence reads (Illumina GAII) with Bowtie and using MACS for peak finding.
- Question 1: Should only unique reads be mapped?
- Question 2: How does the pattern/shape of peaks compare between MeDIP-seq and ChiP-seq?

Thanks.

jjw

Last edited by jjw14; 08-20-2010 at 12:44 PM. Reason: No responses. Shortened post.
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