SEQanswers - View Single Post - MeDIP-seq versus ChIP-seq analyses?

jjw14 · 08-24-2010, 07:55 AM

Thanks very much. Your description of the "independent peaks" or peak "frequency" for MeDIP versus ChIP is exactly the type information I was interested in.

I'm using MACS for peak detection. Do you feel there is a more appropriate algorithm for MeDIP peak detection, especially for the areas of low enrichment you describe?

Much appreciated,
jjw

08-24-2010, 07:55 AM	#5
jjw14 Member Location: Missouri Join Date: Apr 2010 Posts: 39	Thanks very much. Your description of the "independent peaks" or peak "frequency" for MeDIP versus ChIP is exactly the type information I was interested in. I'm using MACS for peak detection. Do you feel there is a more appropriate algorithm for MeDIP peak detection, especially for the areas of low enrichment you describe? Much appreciated, jjw