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Old 10-08-2010, 04:23 PM   #2
Pepe
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Location: Germany

Join Date: Mar 2009
Posts: 28
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What i do with my paired end reads is to filter out the ones that have adapters or bad quality. Then I take the pairs of the removed ones and I put them in a separate file, so the 2 paired end files have the same number of reads and in the same order but I can still use the 'pairless' reads in the analysis.
Maybe they did the same?
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