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Old 12-14-2011, 07:13 AM   #3
Location: Netherlands

Join Date: Dec 2009
Posts: 13

Originally Posted by genericforms View Post
samtools and bamtools both provide very fast APIs you can use, however this requires a minimal experience with a programming language or script...
Yeah, I tried to get into that, but I am not good at "C" language, I could not follow it. I hope someone else has created/thought of something...

I could go directly into text format (i.e. SAM) and parse it with PERL, but that's really very slooooooow.
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