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Old 04-24-2012, 09:51 AM   #1
oxydeepu
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Location: bangalore,india

Join Date: Jul 2011
Posts: 41
Default Bowtie alignment distribution

hi all,

I have aligned my RNA-Seq reads to the reference genome using bowtie. Now i want to know where the reads are getting aligned from the map file - like is it coming from repetitive element or exon, etc.
Please help. Thank you in advance.
Deepak
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