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thedamian · 05-08-2012, 07:06 AM

Is the order of funtions important?
Does this:

Code:

FixMateInformation
SortSam
MarkDuplicates
RealignerTargetCreator
IndelRealigner

mean the same as this:

Code:

SortSam
FixMateInformation
RealignerTargetCreator
IndelRealigner 
MarkDuplicates

05-08-2012, 07:06 AM	#3
thedamian Member Location: Barcelona Join Date: Feb 2012 Posts: 49	Is the order of funtions important? Does this: Code: FixMateInformation SortSam MarkDuplicates RealignerTargetCreator IndelRealigner mean the same as this: Code: SortSam FixMateInformation RealignerTargetCreator IndelRealigner MarkDuplicates