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Old 05-08-2012, 07:06 AM   #3
thedamian
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Location: Barcelona

Join Date: Feb 2012
Posts: 49
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Is the order of funtions important?
Does this:
Code:
FixMateInformation
SortSam
MarkDuplicates
RealignerTargetCreator
IndelRealigner
mean the same as this:
Code:
SortSam
FixMateInformation
RealignerTargetCreator
IndelRealigner 
MarkDuplicates
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