View Single Post
Old 08-20-2012, 07:07 AM   #1
david.tamborero
Member
 
Location: spain

Join Date: Feb 2011
Posts: 60
Default varscan - filter out those snps close to indels

hi,

just a quick question about the somaticFilter provided by Varscan:

--indel-file File of indels for filtering nearby SNPs

What does (exactly) it mean 'nearby'? within the same read? at 'x' bp of distance?

thanks!
david.tamborero is offline   Reply With Quote