SEQanswers - View Single Post - Question of retrieving nucleotides from a list of genomic coordinates..

jparsons · 09-12-2012, 01:49 PM

It's trivial to convert a sorted BAM file into a bed file.
Look at bedtools documentation. (bamtobed, in particular)

09-12-2012, 01:49 PM	#4
jparsons Member Location: SF Bay Area Join Date: Feb 2012 Posts: 62	It's trivial to convert a sorted BAM file into a bed file. Look at bedtools documentation. (bamtobed, in particular)