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Old 12-07-2012, 12:49 PM   #25
Senior Member
Location: Cambridge UK

Join Date: Sep 2008
Posts: 151

You need to give tabix some sort of chromosome name otherwise it doesn't know what to fetch

If you just want to filter the whole file you will need to use zcat

That being said you downloaded the sites file which contains no genotype info and no columns with individual genotypes to filter
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