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Old 07-12-2012, 05:58 PM   #2
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You could pipe all the contigs and BACs through an assembly program again. You might want to chunk the contigs up into overlapping sudo-reads first though. Not having the raw data is pretty large disadvantage, especially if the contigs from the 454 and illumina data are really poor. This meta-assembly of different technologies is not an easy problem to overcome, and not having raw data limits your options.
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