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Old 07-13-2012, 09:22 AM   #4
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Location: San Francisco, CA

Join Date: Feb 2011
Posts: 286

I've only used CAP3 for this meta-assembly stuff, and it is slow, but in my experience the week or two it took was worth it.

You could just make up quality values, say give them all a quality score of 25. You're already making pretty large modifications to the data by assembling it and reassembling it again anyway. Heck, many people doubt the validity of the estimated quality values from NGS machines anyway.
Wallysb01 is offline   Reply With Quote