it is a error when I use ab_wtp_v1.2.1_testData running split_read_mapper.sh -c myconfig.ini. I don't know using Java, so unable to look in detail the error messages.
What does it mean?
Can anyone help me?
Thanks for your suggestions:
USING WT_HOME=/home/corona/wanglei/ab_wtp/ab_wtp_v1.2.1
Logging messages to mapping_output/mapper.log
Aug 30, 2010 9:36:03 AM com.lifetechnologies.solid.wt.mapper.SplitReadsTask doTaskRemotely
SEVERE: Script submission failed.
java.lang.Exception: Script submission failed.
at com.lifetechnologies.solid.wt.cluster.PBSClusterInterface.submitScript(PBSClusterInterface.java:174)
at com.lifetechnologies.solid.wt.cluster.ClusterInterface.executeJob(ClusterInterface.java:161)
at com.lifetechnologies.solid.wt.mapper.SplitReadsTask.doTaskRemotely(SplitReadsTask.java:127)
at com.lifetechnologies.solid.wt.mapper.SplitReadsTask.doTask(SplitReadsTask.java:93)
at com.lifetechnologies.solid.wt.mapper.Mapper.mapReads(Mapper.java:434)
at com.lifetechnologies.solid.wt.cmd.MapperCmd.runCmd(MapperCmd.java:245)
at com.lifetechnologies.solid.wt.cmd.AbstractCmd.run(AbstractCmd.java:221)
at com.lifetechnologies.solid.wt.cmd.CmdRunner.main(CmdRunner.java:20)
Aug 30, 2010 9:36:03 AM com.lifetechnologies.solid.wt.cmd.AbstractCmd run
SEVERE: java.lang.Exception: Script submission failed.
com.lifetechnologies.solid.wt.mapper.TaskException: java.lang.Exception: Script submission failed.
at com.lifetechnologies.solid.wt.mapper.SplitReadsTask.doTaskRemotely(SplitReadsTask.java:143)
at com.lifetechnologies.solid.wt.mapper.SplitReadsTask.doTask(SplitReadsTask.java:93)
at com.lifetechnologies.solid.wt.mapper.Mapper.mapReads(Mapper.java:434)
at com.lifetechnologies.solid.wt.cmd.MapperCmd.runCmd(MapperCmd.java:245)
at com.lifetechnologies.solid.wt.cmd.AbstractCmd.run(AbstractCmd.java:221)
at com.lifetechnologies.solid.wt.cmd.CmdRunner.main(CmdRunner.java:20)
Caused by: java.lang.Exception: Script submission failed.
at com.lifetechnologies.solid.wt.cluster.PBSClusterInterface.submitScript(PBSClusterInterface.java:174)
at com.lifetechnologies.solid.wt.cluster.ClusterInterface.executeJob(ClusterInterface.java:161)
at com.lifetechnologies.solid.wt.mapper.SplitReadsTask.doTaskRemotely(SplitReadsTask.java:127)
... 5 more
What does it mean?
Can anyone help me?
Thanks for your suggestions:
USING WT_HOME=/home/corona/wanglei/ab_wtp/ab_wtp_v1.2.1
Logging messages to mapping_output/mapper.log
Aug 30, 2010 9:36:03 AM com.lifetechnologies.solid.wt.mapper.SplitReadsTask doTaskRemotely
SEVERE: Script submission failed.
java.lang.Exception: Script submission failed.
at com.lifetechnologies.solid.wt.cluster.PBSClusterInterface.submitScript(PBSClusterInterface.java:174)
at com.lifetechnologies.solid.wt.cluster.ClusterInterface.executeJob(ClusterInterface.java:161)
at com.lifetechnologies.solid.wt.mapper.SplitReadsTask.doTaskRemotely(SplitReadsTask.java:127)
at com.lifetechnologies.solid.wt.mapper.SplitReadsTask.doTask(SplitReadsTask.java:93)
at com.lifetechnologies.solid.wt.mapper.Mapper.mapReads(Mapper.java:434)
at com.lifetechnologies.solid.wt.cmd.MapperCmd.runCmd(MapperCmd.java:245)
at com.lifetechnologies.solid.wt.cmd.AbstractCmd.run(AbstractCmd.java:221)
at com.lifetechnologies.solid.wt.cmd.CmdRunner.main(CmdRunner.java:20)
Aug 30, 2010 9:36:03 AM com.lifetechnologies.solid.wt.cmd.AbstractCmd run
SEVERE: java.lang.Exception: Script submission failed.
com.lifetechnologies.solid.wt.mapper.TaskException: java.lang.Exception: Script submission failed.
at com.lifetechnologies.solid.wt.mapper.SplitReadsTask.doTaskRemotely(SplitReadsTask.java:143)
at com.lifetechnologies.solid.wt.mapper.SplitReadsTask.doTask(SplitReadsTask.java:93)
at com.lifetechnologies.solid.wt.mapper.Mapper.mapReads(Mapper.java:434)
at com.lifetechnologies.solid.wt.cmd.MapperCmd.runCmd(MapperCmd.java:245)
at com.lifetechnologies.solid.wt.cmd.AbstractCmd.run(AbstractCmd.java:221)
at com.lifetechnologies.solid.wt.cmd.CmdRunner.main(CmdRunner.java:20)
Caused by: java.lang.Exception: Script submission failed.
at com.lifetechnologies.solid.wt.cluster.PBSClusterInterface.submitScript(PBSClusterInterface.java:174)
at com.lifetechnologies.solid.wt.cluster.ClusterInterface.executeJob(ClusterInterface.java:161)
at com.lifetechnologies.solid.wt.mapper.SplitReadsTask.doTaskRemotely(SplitReadsTask.java:127)
... 5 more
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