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Old 07-10-2009, 01:00 AM   #1
vani s kulkarni
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Location: Netherlands

Join Date: Jun 2009
Posts: 11
Default velvet- stats.txt file

hi
I am using velvet for my solexa reads(36bp).
Can any one explain the use of stats.file, as it will be having the following information

ID, lgth, out, in, long_cov, short1_cov, short1_Ocov, short2_cov, short2_Ocov,
1 1126 0 0 0.000000 18.714032 18.714032 0.000000 0.000000
2 489 0 0 0.000000 40.832311 40.832311 0.000000 0.000000

1-what is the difference between
short1_cov, and short1_Ocov,
2-who these information is use full for selecting contigs.


Thanks
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