View Single Post
Old 07-10-2009, 10:56 AM   #3
allo
Member
 
Location: Davis, CA

Join Date: Jul 2009
Posts: 15
Default

Short1_cov is the contig coverage in K-mers this count includes slightly divergent sequences
Short1_Ocov is the contig coverage in K-mers of sequences that match perfectly to each other and conform the consensus.
Both are reported in k-mers which is the hash length that you used to run velveth.

The node length gives you the size in K-mers of each contig, for example, you can sort this file by the contig size and use this info to ID the largest contig.
allo is offline   Reply With Quote