Thanks I'll give that a try.
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Hi All,
I converted the .bam file to .bai file using
$ samtools index test_sorted.bam test_sorted.bai (and now I have both in the same folder). When i upload the .bam file to IGV it seems to work, but i see no alignment of the reads against the genome (i do see the genome in blue)
I am using the TAIR10 genome.
what could be this? ideas?
many thanks
GLast edited by Gonza; 10-17-2014, 09:14 AM.
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Originally posted by Gonza View PostHi All,
I converted the .bam file to .bai file using
$ samtools index test_sorted.bam test_sorted.bai (and now I have both in the same folder). When i upload the .bam file to IGV it seems to work, but i see no alignment of the reads against the genome (i do see the genome in blue)
I am using the TAIR10 genome.
what could be this? ideas?
many thanks
G
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