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Old 05-12-2017, 08:13 PM   #19
confurious
Junior Member
 
Location: california

Join Date: Apr 2017
Posts: 9
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Hi Brian, sorry for asking for your help again. I am trying to use your bbcountunique.sh but I would like to change the k mer size to a number that is much bigger than 31, say something like 127 because I think 31 is not enough in my case.

I examined the CalcUniqueness.java file and see the assert statement that makes it smaller than 31. I tried to change it and make it into a class via javac but for some reasons it reports a lot of errors within the java file that is probably due to windows to linux system conversion. However, I am not a guru of JAVA so I am stuck at this point. I could message you my email address if it's easier for you to quickly change that (assuming that's the only thing needed) and send me the updated CalcUniqueness.class file.

Thanks so much!
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