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Old 01-19-2015, 04:09 PM   #5
Michael Love
Senior Member
Location: Boston

Join Date: Jul 2013
Posts: 333

That's a question for the EDASeq devels. DESeq2 can take any normalization matrix.

Note that, similar to CQN, the covariates (gene length, GC) are provided as vectors to EDASeq, i.e. one per gene, not a matrix of gene lengths.
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