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Old 02-01-2016, 03:20 PM   #4
GenoMax
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,138
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Have you done searches against the annotated transcriptome from the Matz lab (blastn searches in addition to tblastx perhaps)? That would be your best bet to find quick homologies. You may have already done that though to get to the point where you are at.

Depending on how much time you want to spend on this you could try extending the searches to refseq_genomic (and other databases) but it would be a lot of work to pore through the results and make informed decisions. You will only get so far with just searches.
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