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Old 06-21-2015, 04:05 AM   #4
Michael Love
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Location: Boston

Join Date: Jul 2013
Posts: 333
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What version of DESeq2 software are you using? Type: sessionInfo(). The latest release is 1.8, so I'd recommend first checking if updating helps.

Note that DESeq() includes estimateDispersions() as a step, so you can just proceed from your custom size factor calculation to DESeq().
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