Originally posted by Jose Blanca
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I am going with your explainations. I issued the followed command:
clean_reads -i Pair01_fastq_format.fastq -o ./clean_reads/output_q20_len_50 -p 454 -f fastq -g fastq -min_length 20 --lucy_error 0.025,0.02 --lucy_bracket 10,0.02 --lucy_window 1,0.02
It seems to work fine but no output. The clean_reads.error explains that the input file "Pair01_fastq_format.fastq" is not found. The file is in the same directory from where i issued the command and it says "no such file or directory".
Am i wrong in the command itself?
I really appreciate your help. Thnx
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