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Old 06-22-2012, 07:49 AM   #1
jasmin9x
Junior Member
 
Location: virginia

Join Date: Jun 2012
Posts: 1
Default DEXSeq splicing plot from CuffDiff output

I am new to RNASeq and just followed Nature protocol paper for Tophat-Cufflink for analysis (http://www.nature.com/nprot/journal/....2012.016.html).
Now I want to get alternative splicing visualization that is not described in that paper. I don't know how to do that or better tool for that. I came across DEXSeq and manual shows similar plots but have no Idea how to do so from my analysis output or data.
Please help me to get those type of graphs as shown on Page 10 on DEXSeq manual at http://watson.nci.nih.gov/bioc_mirro...doc/DEXSeq.pdf

Highly appreciate your help.
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