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Old 06-25-2012, 01:08 AM   #2
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Location: Heidelberg

Join Date: Aug 2010
Posts: 165

If you want to use the plotting function of DEXSeq, the vignette that you posted has the instructions to make them. You have to make an ExonCountSet object with your data, you can find an example of how to do this in the pasilla data package vignette:

Your idea, I guess, would be to use plotDEXSeq in the cuffdiff hits.
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