Software for determining Genes near peaks?

[chariko]

Hi all,

I am interested in getting the list of genes near to my peaks. I have tried different packages but they only give you the nearest gene to your peak. I would be interested in getting a software in which you could get alll the genes up to a distance determined by me.

Does anybody know whether this exits?

Thanks in advance

[kopi-o]

There are lots. For example, BEDTools (windowBED) and cisGenome. The online tool Galaxy also has this kind of functionality.