Hi everyone, I'm new in this forum !
I'd love to have some guidelines from you!
I 've started using RepeatExplorer, to find highly repeated (obviously) sequences, in data from Miseq Illumina. We don't have reference genomes, cause we are working on parasites that their genome has not been sequenced yet (only mt).
We need the repeats to develop a diagnostic kit, so we don't care pretty much from assembling the sequence.
The output after running hours and hours of RepeatExplorer gives clusters, graphs-so many graphs- and I'm a bit confused.
Anyone has/had same experience ?
Thank you very very much !
I'd love to have some guidelines from you!
I 've started using RepeatExplorer, to find highly repeated (obviously) sequences, in data from Miseq Illumina. We don't have reference genomes, cause we are working on parasites that their genome has not been sequenced yet (only mt).
We need the repeats to develop a diagnostic kit, so we don't care pretty much from assembling the sequence.
The output after running hours and hours of RepeatExplorer gives clusters, graphs-so many graphs- and I'm a bit confused.
Anyone has/had same experience ?
Thank you very very much !
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