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Old 06-06-2013, 12:49 AM   #4
Location: Singapore

Join Date: Nov 2011
Posts: 85

I suppose it depends on the project. In some cases its better to construct a special version of the genome containing only the targeted regions.

In my case of amplicon seq, 50% of the reads are mapped all over the genome.

Well at least i will try to create a special version of the genome and then remap and compare the results.
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