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Old 08-07-2015, 01:44 PM   #7
Junior Member
Location: Ohio

Join Date: Aug 2015
Posts: 2

Thank you Brian for the fast reply. I will look more closely at the parameters for different aligners to see how to speed things up. So far I have tried BWA and Bowtie2, with default parameters. I have also tried dividing the original .bam into 24 parts and doing the alignment on separate cores, but it is still taking more than 2 days.
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