As manual processing of sequencing data becomes impossible, it would be good to identify sequencing quality metrics that could/should be calculated/plotted within a sequencing pipeline.
What programs do you use to check the quality of your sequencing runs? Specifically, what metrics have you found useful pre-alignment, post-alignment, and post-variant-detection? What metrics/plots would you find useful if they were automatically generated?
What programs do you use to check the quality of your sequencing runs? Specifically, what metrics have you found useful pre-alignment, post-alignment, and post-variant-detection? What metrics/plots would you find useful if they were automatically generated?
Comment