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Old 02-15-2010, 11:15 AM   #2
Location: Stockholm, Sweden

Join Date: Oct 2009
Posts: 62

I think that the mate inner distances is set in order to detect whether the mates are in different exons etc. That is, if the distance is much larger/smaller than the 200 (300-2*50) that the software has been told to expect, something interesting might be going on.
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