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Old 11-18-2015, 04:29 AM   #1
Location: UK

Join Date: Nov 2015
Posts: 19
Default Cuffmerge question - manifest files


So I'm new to using cuffmerge. I have all of my .bam files from the output of cufflinks and want to combine them using cuffmerge. I'm a bit confused about the command line usage of cuffmerge. It says to 'input GTF files must be specified in a “manifest” file listing full paths to the files'. I'm vaguely aware of what a manifest file is, but not really sure how to go about making one from my .gtf files.

Any help?

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