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Old 06-01-2012, 12:40 AM   #6
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Location: UK

Join Date: Jan 2010
Posts: 390

Originally Posted by ymc View Post
Are there any targeted therapies in the work after you did this type of comparison?
If that's directed at me - not in the case of my exome work, but I do work on small, targeted cancer panel development for stratified medicine.

Your also posted Strelka and JointSNVMix - I find the latter somewhat confusing to get to grips with, Strelka is on my to do list. I tend to use VarScan2 for paired comparisons for e.g. copy number. Neither as far as I am concerned answer the question from the OP as they both require BAM files for input.
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